PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00332

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 598aa MW: 64989.9 Da PI: 6.2807

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00332	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.5e-30	334	392	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OIT00332 334 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGTHNHP 392 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MANGSGLSFD PDPIKHFLPF LQPTKLFNFQ PLLTSMESSP YKNRSPPSTI QFPVNLNCSN 60 TDHNQEEEEE QKIRPVIDEM DFFADHKKGG SNSEEAATTA NNTAVDTERK ESNTLPPELD 120 FNINTGLHLL TANTYSDQSI VEDGLSPNSE DKRTKNELAV LQAELERMNG ENRRLKDMLN 180 QATNNYSNLH MQMMTMIQQQ QHQENDQHEG KSEEVRQQIH SKNGHGVGGQ IVPRQFMDLG 240 LAAATGSEAE ETSLSSSEGR SGRDKSRSPT NNMESGSTCG IGREDSPEKG SPGWGPNKIP 300 RLGNGSKSTD QATEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT 360 MAAGCPVRKQ VQRCAEDRTI LITTYEGTHN HPLPPAAMAM ASTTSSAARM LLSGSMPSAD 420 GLMNSNFFAR TLLPCSSSMA TISASAPFPT VTLDLTQSPN PLQFPRPPNQ FQVPFSNQPH 480 NMLSNPAALL PQIFNQALYN QSKFSGLQLS QDSEGQNAST LPSSIHQSNH NPLADTVNAL 540 TADPNFTAAL AAAITSLIGN PQQPNNGSTN NTTAITTTAN NQNSSVTTNG NNTSNGNQ

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MANGSGLSFD PDPIKHFLPF LQPTKLFNFQ PLLTSMESSP YKNRSPPSTI QFPVNLNCSN  60
TDHNQEEEEE QKIRPVIDEM DFFADHKKGG SNSEEAATTA NNTAVDTERK ESNTLPPELD  120
FNINTGLHLL TANTYSDQSI VEDGLSPNSE DKRTKNELAV LQAELERMNG ENRRLKDMLN  180
QATNNYSNLH MQMMTMIQQQ QHQENDQHEG KSEEVRQQIH SKNGHGVGGQ IVPRQFMDLG  240
LAAATGSEAE ETSLSSSEGR SGRDKSRSPT NNMESGSTCG IGREDSPEKG SPGWGPNKIP  300
RLGNGSKSTD QATEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT  360
MAAGCPVRKQ VQRCAEDRTI LITTYEGTHN HPLPPAAMAM ASTTSSAARM LLSGSMPSAD  420
GLMNSNFFAR TLLPCSSSMA TISASAPFPT VTLDLTQSPN PLQFPRPPNQ FQVPFSNQPH  480
NMLSNPAALL PQIFNQALYN QSKFSGLQLS QDSEGQNAST LPSSIHQSNH NPLADTVNAL  540
TADPNFTAAL AAAITSLIGN PQQPNNGSTN NTTAITTTAN NQNSSVTTNG NNTSNGNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-116	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT00332