PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00030

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 405aa MW: 44459.5 Da PI: 4.8871

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00030	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.8	7.9e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ OIT00030 4 TCEFCGEQPSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 7*****************************65677777765 PP
2	zf-B_box	27.7	5.6e-09	46	88	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C++++++++++ C + + lC++C +H + H+++ OIT00030 46 LLCERCNSQPAIFRCLEERISLCQNCDWIGHANsssgptHKRQ 88 57*****************************888889999876 PP
3	CCT	61.3	3.2e-21	348	391	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+ktR+F+K++rY+sRKa+A+ R RvKGrFvk+ OIT00030 348 RSDAVLRYKEKKKTRQFDKRVRYASRKARADVRRRVKGRFVKAG 391 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MGYTCEFCGE QPSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAIFRC 60 LEERISLCQN CDWIGHANSS SGPTHKRQAL SCYTGCPSAV ELSTIWSFLL DNPSVGDSTC 120 EQGMSSMSIT DCRPGDSRGS QAKDKSQDMS VAVEANDLMR SSMPSLDNKL HNVEPPVGST 180 NLTWSKVCNS GTKGSNLFDD DPFYDDFNMD EVDLSIGNYE ELFGVSLDNP DQLFKNEDID 240 GLFGMKDMPV AESSCQGDNA VEVGSAVRRV NTVQPACSNA ASAESMMSSK TEPALCFARQ 300 QSNLSVSNLT GESSAGDYQD CGASSMLLMG EPPWCSPCPE ISMPSTSRSD AVLRYKEKKK 360 TRQFDKRVRY ASRKARADVR RRVKGRFVKA GDAYDYDPLS ETRSY

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MGYTCEFCGE QPSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAIFRC  60
LEERISLCQN CDWIGHANSS SGPTHKRQAL SCYTGCPSAV ELSTIWSFLL DNPSVGDSTC  120
EQGMSSMSIT DCRPGDSRGS QAKDKSQDMS VAVEANDLMR SSMPSLDNKL HNVEPPVGST  180
NLTWSKVCNS GTKGSNLFDD DPFYDDFNMD EVDLSIGNYE ELFGVSLDNP DQLFKNEDID  240
GLFGMKDMPV AESSCQGDNA VEVGSAVRRV NTVQPACSNA ASAESMMSSK TEPALCFARQ  300
QSNLSVSNLT GESSAGDYQD CGASSMLLMG EPPWCSPCPE ISMPSTSRSD AVLRYKEKKK  360
TRQFDKRVRY ASRKARADVR RRVKGRFVKA GDAYDYDPLS ETRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-111	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT00030