PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99983

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 893aa MW: 98729.7 Da PI: 6.3197

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99983	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.6	1.4e-24	130	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F ++++ +l+++ OIS99983 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI--WNENNQLLLG 227 99***************************97677775.9********************************************..7888889* PP EE-S CS B3 96 vfrk 99 ++r+ OIS99983 228 IRRA 231 *997 PP
2	Auxin_resp	120.9	9.7e-40	256	339	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k OIS99983 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MRVSSAGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN 60 KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG 120 IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW 180 KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS 240 SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR 300 FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE 360 PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNGDMTMNSP LSWLRGDIGD QGIQSLNFQG 420 YGVTPFMQPR IDASMLGLQP DILQTMAALD PSKLANQSFM QFQQSIPGGS ASLSHSQILQ 480 PSHSQQNLLH SFSENQLISQ AQMLQQQLQR RQNYNDQQQL LQPQLQQHQE VNSSQFQHQQ 540 QTKAMSSLSQ MTSAAQPQLS HLQVLSSTGS PQTFSDILGN HVNASSNSTM QSLLSSFSRD 600 GASAVLNMHE AHPLVSSSSS SKRIALESQL PSRVTPFAVP QPEDVISHNT KVSDLSSLLP 660 PFPGRESFSD YRGVEDSQNN ALYGFNTDSL NILQNGMSNM KDSSGDNGSL SIPYATSTFT 720 NTVGNEYPIN SDMTTSSCVD ESGFLQSSEN GDQGNPTNRT FVKVHKSGSF GRSLDISKFS 780 SYHELRSELA HMFGLEGLLE DPERSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS 840 PLEVQQMGKE GLDLPNAGQA QRLPSSGVGC DDYMNQKGSR NTMNGIPLGS LDY

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MRVSSAGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG  120
IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNGDMTMNSP LSWLRGDIGD QGIQSLNFQG  420
YGVTPFMQPR IDASMLGLQP DILQTMAALD PSKLANQSFM QFQQSIPGGS ASLSHSQILQ  480
PSHSQQNLLH SFSENQLISQ AQMLQQQLQR RQNYNDQQQL LQPQLQQHQE VNSSQFQHQQ  540
QTKAMSSLSQ MTSAAQPQLS HLQVLSSTGS PQTFSDILGN HVNASSNSTM QSLLSSFSRD  600
GASAVLNMHE AHPLVSSSSS SKRIALESQL PSRVTPFAVP QPEDVISHNT KVSDLSSLLP  660
PFPGRESFSD YRGVEDSQNN ALYGFNTDSL NILQNGMSNM KDSSGDNGSL SIPYATSTFT  720
NTVGNEYPIN SDMTTSSCVD ESGFLQSSEN GDQGNPTNRT FVKVHKSGSF GRSLDISKFS  780
SYHELRSELA HMFGLEGLLE DPERSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS  840
PLEVQQMGKE GLDLPNAGQA QRLPSSGVGC DDYMNQKGSR NTMNGIPLGS LDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIS99983