PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99854

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 502aa MW: 55194.2 Da PI: 8.9204

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99854	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIS99854 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	12.5	0.00044	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + OIS99854 159 WKCEKCSKRYAVQSDWKAHSKIC 181 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MIKGMVGDDS MSNLTSASNE ASISSSNRAE IGSALYPQHL APTNIQTQPA PANKKKRNLP 60 GNPDPEAEVI ALSPKSLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVK 120 KKVYVCPEPS CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKI 180 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESVRTTNP LISSSSTSHH LNLHTLQNFQ 240 LKQEQQQQQQ QQINNFNLLP PHPPNELSSQ LFIHNPSSSS SNNIFGAATA ATSAHMSATA 300 LLQKAAQIGV TSSNSNSAPS FFSPTTAATT TGMTDSGDLA SREYHQFQNI SANNSTMAPT 360 TGNFVTGHGL ASYGDNNNNN NKGAFDHFSV NSGFMEQIHD MQNMMAAATT TTNLPCTNNN 420 VGFDEGFGGA NNPLIMRGKE NNEGLTRDFL GLKAFPHHRD FLNNTTTTGL HHQMGSSSSA 480 AAAASFDHHQ HNQNQNQSPW QN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MIKGMVGDDS MSNLTSASNE ASISSSNRAE IGSALYPQHL APTNIQTQPA PANKKKRNLP  60
GNPDPEAEVI ALSPKSLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVK  120
KKVYVCPEPS CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKI  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESVRTTNP LISSSSTSHH LNLHTLQNFQ  240
LKQEQQQQQQ QQINNFNLLP PHPPNELSSQ LFIHNPSSSS SNNIFGAATA ATSAHMSATA  300
LLQKAAQIGV TSSNSNSAPS FFSPTTAATT TGMTDSGDLA SREYHQFQNI SANNSTMAPT  360
TGNFVTGHGL ASYGDNNNNN NKGAFDHFSV NSGFMEQIHD MQNMMAAATT TTNLPCTNNN  420
VGFDEGFGGA NNPLIMRGKE NNEGLTRDFL GLKAFPHHRD FLNNTTTTGL HHQMGSSSSA  480
AAAASFDHHQ HNQNQNQSPW QN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIS99854