PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99778
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 322aa    MW: 35855.8 Da    PI: 8.9033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99778genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07263304443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      W+  Ed+ l++a k ++++   +W++Ia+ ++ gR+   c  r
         OIS99778 263 WSSGEDLALLNALKTFPKEvamRWEKIAAAVP-GRSKAACMKR 304
                      ********************************.*******988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MEFLDEDARP RFLLQSKPLQ QSNSDPETQT RSLYRPGIII SISLSLLFFA LSFLYFTIEP  60
FGSLLIWLSL SLLIGPFAPL SVTAGDIRIG LGPPIQDPPK DDLSDSETDA KKTNRRSNRP  120
TKKVVDFEPV LPENINGSVA NSEKINGSVV NSAKINGSVA NSEKINGSSE WSEGDEELLR  180
KMMGKHPVGK PGRWEAIAEG FNGRYRVENV IKKAKELGEK KMSDEDSYQR FLKDRKQVDK  240
RSESGNEDDF ENVEVKKVVE NGWSSGEDLA LLNALKTFPK EVAMRWEKIA AAVPGRSKAA  300
CMKRMTVLKK DFRSSKSANA EA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-73MYB_related family protein