PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99638
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 480aa    MW: 52471.4 Da    PI: 5.8388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99638genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.74.4e-452774533181
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               ++++++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL    +   + ++ ++pp+  ++ + + ++ a+k+fse+sP+++f ++t Nq Il
  OIS99638 277 DQIFQASELLLAGQFSNAQMILARLNQQLSPLGKPFKRSAFYFKEALLLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEISPLIQFMNFTSNQPIL 375
               67899999999************************************998887..7777889***99999******************************* PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
               ea+  ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L+ fA+ +g++fe +v+
  OIS99638 376 EALGDAKEIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVI 453
               **************************************************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    
MKWRPSSYFG ANGVTAFKSC PSASASSSSC SYGGNMGEKS DLGFGDLDNL LPELAGSDQT  60
LFRCISGDME DPSVSLKQLL QGGNENADLG CGVSVQSSGF EVSAAGSLAH TDNVSFSNSN  120
LLLSANIEKI GSVINSDNKQ NVNFEHLNVN LLARNLPPSL SFQEQQSEQN SAYVNMLGSL  180
SYDISQEQPP PKRHNSGTLG SSLSALLPEV PFFDSSGDLL LRKQPLGQMR QQVNLLPFHQ  240
FQQKPLIVPK LEAAGGGGNG NLMVPRHQQQ EQQFIYDQIF QASELLLAGQ FSNAQMILAR  300
LNQQLSPLGK PFKRSAFYFK EALLLPFLLP CTSTSFPPRI PTPFDCVLKM DAYKAFSEIS  360
PLIQFMNFTS NQPILEALGD AKEIHIIDFD IGCGAQWSSF MQELRSSNRK ATSLKITAFV  420
SPSTHHSVEI GIMHESLTLF ANDVGIRFEL EVIKLGTSFV PLRLIPXTFT KSCCIIGTWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-41GRAS family protein