PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99416
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 428aa    MW: 48434.6 Da    PI: 6.513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99416genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-14253300254
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h e+Er+RR+++N++f eLr+++P+      ++++Ka+ L  Av YI++L
  OIS99416 253 QMNHVEAERQRREKLNHRFYELRSVVPQV-----TRMDKASLLSDAVAYINEL 300
               689*************************8.....7***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MDELIFPSAS ISQENQPSTL EQRLQYILKS QTNSWAYAIF WQTTSNKDNN GSFFLTWGDG  60
HFQGSNKDVE WFYVLSLAKS YSGNEGVIGK AFSTASFVWL NGAQQLQFCS CERAKEAQYN  120
GVKTLVCVPI SNGVLELGSS DIIKEDWTLV QQVKSLFCSV QENGPINFLD QNSTIYFANF  180
DFVTGMQIDV QESDNNSSKK VATMSHASFL DSELSNSDCQ LLEHPLQKSR VGSKIRRTYR  240
KRERKPGVDC DKQMNHVEAE RQRREKLNHR FYELRSVVPQ VTRMDKASLL SDAVAYINEL  300
KAKVDKLESK LHRVLELKKK PQMEHNDAVD NQSSTNSVDH KNQTLKVEVK MIGPDAMIRV  360
QSEDVNYPST RLMCALQDLE LHVYHANISS VNNIVVQDIV ISVPNKGLKT EDGLRAALLT  420
SLEQIEAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-78bHLH family protein