PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99357

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 427aa MW: 48827.8 Da PI: 5.7021

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99357	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	144	187	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ OIS99357 144 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 187 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MKSSLMCSIS LAKIIPPEND VQGTKVYQKH LEECLAIKHI ILASMSSELQ RKHQNMDPTA 60 IIEYLKKMVD TQLDIENSPV GPLVNHMIVL TEEHEKLGYK LGKELSEDLI LQSVYDAECF 120 HWLQRCGKSC RLRWINYLRP DLRRGSFTEQ EERTIIDVHR ILGNRWAQIA KHLPGRTDNE 180 VKNFWNSCIK KKLIAQGLDP NTHNLLIKNK TNNSTKAKTH HHQDSTSVFT IDTSTNKEVI 240 SMDIKATLAS FSPFPSSNNN TTSTTYNYSP ILPNIEYQNP TFTWSDQRNQ TVTTTSQSQT 300 SDRNHVITQN SMLDFASCSL MESSTNIRQG ETEYINENNM WHGTGIEPTT LNPANGTEEL 360 MQVQQGEQFP IKTNFCDQED VYKVNHDQTV ENTFDISNFD FDFVDSTLVP CGLYTSVNSM 420 DQISWDC

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MKSSLMCSIS LAKIIPPEND VQGTKVYQKH LEECLAIKHI ILASMSSELQ RKHQNMDPTA  60
IIEYLKKMVD TQLDIENSPV GPLVNHMIVL TEEHEKLGYK LGKELSEDLI LQSVYDAECF  120
HWLQRCGKSC RLRWINYLRP DLRRGSFTEQ EERTIIDVHR ILGNRWAQIA KHLPGRTDNE  180
VKNFWNSCIK KKLIAQGLDP NTHNLLIKNK TNNSTKAKTH HHQDSTSVFT IDTSTNKEVI  240
SMDIKATLAS FSPFPSSNNN TTSTTYNYSP ILPNIEYQNP TFTWSDQRNQ TVTTTSQSQT  300
SDRNHVITQN SMLDFASCSL MESSTNIRQG ETEYINENNM WHGTGIEPTT LNPANGTEEL  360
MQVQQGEQFP IKTNFCDQED VYKVNHDQTV ENTFDISNFD FDFVDSTLVP CGLYTSVNSM  420
DQISWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	9e-52	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS99357