PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS99326

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 461aa MW: 51822.9 Da PI: 6.4522

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS99326	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.3e-14	24	68	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++ +G+++W+ Ia+++ +t qc+ rw++yl OIS99326 24 SWSQEEDDILREQIRIHGTDNWTIIASKFK-DKTTRQCRRRWFTYL 68 6**************************9.***********97 PP
2	Myb_DNA-binding	43.9	5.4e-14	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + OIS99326 74 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 117 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MQQNMKKSSS SCEAAKPKER HIVSWSQEED DILREQIRIH GTDNWTIIAS KFKDKTTRQC 60 RRRWFTYLNS DFKKGGWSPE EDMLLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFTTLCK 120 KRAKHEALAK ENSNSFVNLN NKRVIFPDGL NFDNITEAAA PFKKLRMSHI SDARQNCDSG 180 EKSFGDCGTT HPLLRHPFAV LAQNFRNAGK NLASHQQTTE NDNKTQGTFL KKDDPKVQAL 240 MQQAELLSSL AMKVNTENTD QSLENAWKIL QDFLHQTKEG EMLKFQIPEM NLGPDDYKDL 300 IADSKSSNEG SRPSWRQPAL SEDSAGSSEY STGSTLLSHA LADKTEESQA EVCAHHQDIE 360 SELRTSQMSD LDTLPVCGEE KVNDGPATAT AECEFLDTDF TSPLQVTPLF RSLAAEIPTP 420 KFSESERQFL LKTLGVESTS PYPGTNHTQP PSCKRALLHS L

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MQQNMKKSSS SCEAAKPKER HIVSWSQEED DILREQIRIH GTDNWTIIAS KFKDKTTRQC  60
RRRWFTYLNS DFKKGGWSPE EDMLLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFTTLCK  120
KRAKHEALAK ENSNSFVNLN NKRVIFPDGL NFDNITEAAA PFKKLRMSHI SDARQNCDSG  180
EKSFGDCGTT HPLLRHPFAV LAQNFRNAGK NLASHQQTTE NDNKTQGTFL KKDDPKVQAL  240
MQQAELLSSL AMKVNTENTD QSLENAWKIL QDFLHQTKEG EMLKFQIPEM NLGPDDYKDL  300
IADSKSSNEG SRPSWRQPAL SEDSAGSSEY STGSTLLSHA LADKTEESQA EVCAHHQDIE  360
SELRTSQMSD LDTLPVCGEE KVNDGPATAT AECEFLDTDF TSPLQVTPLF RSLAAEIPTP  420
KFSESERQFL LKTLGVESTS PYPGTNHTQP PSCKRALLHS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-175	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS99326