PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98895

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 539aa MW: 59509.8 Da PI: 6.6016

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98895	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	24.1	8.7e-08	242	311	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.........kr....krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g + ++g ++ +e+Aa+a++ a++k++g OIS98895 242 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqarkgrqveIFmlenFAMNIGGYDKEEKAARAYDLAALKYWG 311 57*****************6666734676565444114423334889999999***********98 PP
2	AP2	49.7	9.2e-16	354	405	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OIS98895 354 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 405 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MAPDNNNNWL SFSLSSMEML SSSASQSNSM LQSNMKLAPT FDGSSSADSH HYYFADNFFP 60 HGWSNPKSQV MYTEGEKEVL GLNINGNDSS IFQNFLDTQI HQQTPPKLED FLGGDSSSLT 120 QDSSSLTHQI YEQQQQNNGS AVYHQDFKNL AHGFQYQATA AAAFSNNSGS EVDNSVGTEF 180 VSESCNELAY SQCPPALSTG ALSLAVNTTN NTQCLEKEKA IVAVVGSESC KKITDTFGQR 240 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVEIF MLENFAMNIG GYDKEEKAAR 300 AYDLAALKYW GPTATTNFPV SNYTKELEEM KHMTKQEFIA SLRRKSSGFS RGASIYRGVT 360 RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGVNAVT NFEMNRYDVE 420 AIMKSSLPVG GTAKRLKLSL EAEQKSLSSN NQQLTTHSSS NSNNSSSNIN FGAMPPMSAI 480 PCGVPFDATA PFYHHNFFHH LQSTNAGAPD TSGAVTTMAS AMPLLPSGAE FFIWPHQSY

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MAPDNNNNWL SFSLSSMEML SSSASQSNSM LQSNMKLAPT FDGSSSADSH HYYFADNFFP  60
HGWSNPKSQV MYTEGEKEVL GLNINGNDSS IFQNFLDTQI HQQTPPKLED FLGGDSSSLT  120
QDSSSLTHQI YEQQQQNNGS AVYHQDFKNL AHGFQYQATA AAAFSNNSGS EVDNSVGTEF  180
VSESCNELAY SQCPPALSTG ALSLAVNTTN NTQCLEKEKA IVAVVGSESC KKITDTFGQR  240
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVEIF MLENFAMNIG GYDKEEKAAR  300
AYDLAALKYW GPTATTNFPV SNYTKELEEM KHMTKQEFIA SLRRKSSGFS RGASIYRGVT  360
RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGVNAVT NFEMNRYDVE  420
AIMKSSLPVG GTAKRLKLSL EAEQKSLSSN NQQLTTHSSS NSNNSSSNIN FGAMPPMSAI  480
PCGVPFDATA PFYHHNFFHH LQSTNAGAPD TSGAVTTMAS AMPLLPSGAE FFIWPHQSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-150	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIS98895