PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98819

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 474aa MW: 52721.6 Da PI: 7.0598

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98819	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	6.9e-13	328	374	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq OIS98819 328 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 374 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MGEKHFMKEE ERVIMEGILG REAVEFFTWS ASNSMLTEFT SSRGDLGVQQ ALCKIVEGFD 60 WTYAIYWQVA KSKSGKSALI WGDGHCREAK MGQSEPGNDS QHQKVMDGNK KKLVLQKIHT 120 CFGGSEDDNI TAKLDSVSDV EVFYLTSMYY VFPFEKPSSP SQSFNSARSI WVSEVKGCLE 180 HFQSRSYLAK LAGFETLVFV PLKSGVVELG SLKSIAEDQN LIQMVKTSVV VSNPPQPKAI 240 PKIFGRELSL GGSKSGPISI NFSPKAEEDL SFASDTYEVQ AALGSSQVYG NSSNGYRSDE 300 GEGKLELDER KPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV VPNISKMDKA 360 SLLGDAIAYI TDLQARIRVL DAEKEMVNDK QKQQTPLEID FHQRQDDAVV RVGCPLNAHP 420 VSRVLKTFQE HQIVAQESNV SLTENSEIVH TFSIRAPGGA ADNLKEKLTA ALSK

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MGEKHFMKEE ERVIMEGILG REAVEFFTWS ASNSMLTEFT SSRGDLGVQQ ALCKIVEGFD  60
WTYAIYWQVA KSKSGKSALI WGDGHCREAK MGQSEPGNDS QHQKVMDGNK KKLVLQKIHT  120
CFGGSEDDNI TAKLDSVSDV EVFYLTSMYY VFPFEKPSSP SQSFNSARSI WVSEVKGCLE  180
HFQSRSYLAK LAGFETLVFV PLKSGVVELG SLKSIAEDQN LIQMVKTSVV VSNPPQPKAI  240
PKIFGRELSL GGSKSGPISI NFSPKAEEDL SFASDTYEVQ AALGSSQVYG NSSNGYRSDE  300
GEGKLELDER KPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  360
SLLGDAIAYI TDLQARIRVL DAEKEMVNDK QKQQTPLEID FHQRQDDAVV RVGCPLNAHP  420
VSRVLKTFQE HQIVAQESNV SLTENSEIVH TFSIRAPGGA ADNLKEKLTA ALSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	318	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-165	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS98819