PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98767

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 611aa MW: 67850.9 Da PI: 4.9176

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98767	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	495	543	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT +E +lv++v+++G g+W+ I r Rt ++k++w+++l OIS98767 495 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 543 8***************************9999*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MEANEADIEG SVVPVTNTLG ALEKEIADPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED 60 DKCELKLVPD TRQTTESCKT EGCLMERNPF QAPEEKSNAS VDKVPDLEKI GAPEKETVHG 120 SAPCSELSNI DLSGRTEISI NSEDALNEDT PSTSASSSWK PDFSKLEGKI CLDNLTVKEL 180 QETFKATFGR ETSVKDKQWL KRRITMGLTN SCDFSCTTFI IRDNLVVRKG EEQISHPVKV 240 RISADPEVGV ANSDSGGSLG DHDNRVNDDA NFSGTDVPSS AFESCNVIKD MYAEQGTAKR 300 VRKPTKRYIE ELSEIEETSE KLPSSDKVSR YRFPCTESLM RPTANVRSNA RPLFTRQDSL 360 GGSGVQIPFV SRIRRSRPRE NFTSLLKLQP SDMDMATRQV RSVFDVSGPQ EDDKRNNDLI 420 KTSSTPGLTK QPLIAACEKD EHYSGMRIVE LENDMDEDNS DDNVELNDGF EDNSDDNVIS 480 VPTPKGGIRR KHHRPWTIDE VVKLVEGVAR YGAGRWSEIK RLAFASCPYR TSVDLKDKWR 540 NLLKASFVQL PAEKGMLNSR KQASVPIPAP ILSRVRELAD MQGQFQPILS TSKSSGHSSG 600 RSVHEARSGY L

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MEANEADIEG SVVPVTNTLG ALEKEIADPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCELKLVPD TRQTTESCKT EGCLMERNPF QAPEEKSNAS VDKVPDLEKI GAPEKETVHG  120
SAPCSELSNI DLSGRTEISI NSEDALNEDT PSTSASSSWK PDFSKLEGKI CLDNLTVKEL  180
QETFKATFGR ETSVKDKQWL KRRITMGLTN SCDFSCTTFI IRDNLVVRKG EEQISHPVKV  240
RISADPEVGV ANSDSGGSLG DHDNRVNDDA NFSGTDVPSS AFESCNVIKD MYAEQGTAKR  300
VRKPTKRYIE ELSEIEETSE KLPSSDKVSR YRFPCTESLM RPTANVRSNA RPLFTRQDSL  360
GGSGVQIPFV SRIRRSRPRE NFTSLLKLQP SDMDMATRQV RSVFDVSGPQ EDDKRNNDLI  420
KTSSTPGLTK QPLIAACEKD EHYSGMRIVE LENDMDEDNS DDNVELNDGF EDNSDDNVIS  480
VPTPKGGIRR KHHRPWTIDE VVKLVEGVAR YGAGRWSEIK RLAFASCPYR TSVDLKDKWR  540
NLLKASFVQL PAEKGMLNSR KQASVPIPAP ILSRVRELAD MQGQFQPILS TSKSSGHSSG  600
RSVHEARSGY L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	7e-93	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIS98767