PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98539

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CPP

Protein Properties

Length: 823aa MW: 89101.4 Da PI: 5.9703

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98539	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.8	3.3e-16	522	560	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk OIS98539 522 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 560 689**********************************96 PP
2	TCR	51	2.8e-16	608	646	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN OIS98539 608 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 646 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence
MSTEEEKVSL ERENVVEKES EEGRKSVKGG GVKGGVVVVM DTPERKKNQI ATPISKFEES 60 PVFNFLNNLS PIKLDKSAHF TQTLNSLSFA SIPSVFTSPH VSSIRESRFL RRHLLSDPSK 120 PEFASDNGVK VDTDEGMLDA VNNSIEPKES FGCGISGGEA PASPSHECSK LAVELARSLN 180 YECSSPSTLP TGGIRGKSLP EFAGTSVTYV PLVQEISGKG LLRCEVNMDG TNEIVQDKEE 240 ASGCDWESLI TDATDLLIFD SPGDPEAFTK ASGANFRTFE YVSNEMQNVQ HFTQVSTSEC 300 GGDGSETEKP STQPGEESQL KEYADAENTK PDASLTNDGM CVGQSEKNDN EMVSALYRGM 360 RRRCLVFEMV GPRRKHIDEG SGSSAAQEAD GNVASNDKQL VPSKTVNEYP RCTLPGIGLH 420 LNSLTASSKD GKVVKQEANA SGKQLVIASG SSITLHSSVT GQESLVKSLP ETSRGGEIVP 480 FENSLPLMED VFQAPGYVNS EESNQTSPKK KRRRLETGEG ESCKRCNCKK SKCLKLYCEC 540 FAAGVYCVEP CACQDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRTTD SLSETTGDDS 600 SKTPASARHK RGCNCKKSGC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGTDGDAEEE 660 ETDAYEKSIV DRTSHKNLVQ SDVEQNPDSG PPATPLNFGR PPMQLPFSLK NKPPRSSFLS 720 IGSSSGGIYA AGQGVGRANF FQPQPKFDKP FESVQVQEDE MPEILQGTKS PVSGIKTASP 780 NRKRVSPPHC NYGNSHSHSP GRRSSRKLIL QSIPSFPSLT PNP

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence

MSTEEEKVSL ERENVVEKES EEGRKSVKGG GVKGGVVVVM DTPERKKNQI ATPISKFEES  60
PVFNFLNNLS PIKLDKSAHF TQTLNSLSFA SIPSVFTSPH VSSIRESRFL RRHLLSDPSK  120
PEFASDNGVK VDTDEGMLDA VNNSIEPKES FGCGISGGEA PASPSHECSK LAVELARSLN  180
YECSSPSTLP TGGIRGKSLP EFAGTSVTYV PLVQEISGKG LLRCEVNMDG TNEIVQDKEE  240
ASGCDWESLI TDATDLLIFD SPGDPEAFTK ASGANFRTFE YVSNEMQNVQ HFTQVSTSEC  300
GGDGSETEKP STQPGEESQL KEYADAENTK PDASLTNDGM CVGQSEKNDN EMVSALYRGM  360
RRRCLVFEMV GPRRKHIDEG SGSSAAQEAD GNVASNDKQL VPSKTVNEYP RCTLPGIGLH  420
LNSLTASSKD GKVVKQEANA SGKQLVIASG SSITLHSSVT GQESLVKSLP ETSRGGEIVP  480
FENSLPLMED VFQAPGYVNS EESNQTSPKK KRRRLETGEG ESCKRCNCKK SKCLKLYCEC  540
FAAGVYCVEP CACQDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRTTD SLSETTGDDS  600
SKTPASARHK RGCNCKKSGC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGTDGDAEEE  660
ETDAYEKSIV DRTSHKNLVQ SDVEQNPDSG PPATPLNFGR PPMQLPFSLK NKPPRSSFLS  720
IGSSSGGIYA AGQGVGRANF FQPQPKFDKP FESVQVQEDE MPEILQGTKS PVSGIKTASP  780
NRKRVSPPHC NYGNSHSHSP GRRSSRKLIL QSIPSFPSLT PNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	508	515	PKKKRRRL
2	509	514	KKKRRR
3	511	515	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-130	CPP family protein

Link Out ? help Back to Top
Ensembl	OIS98539