PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98485
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 544aa    MW: 60821.9 Da    PI: 5.9754
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98485genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.31.5e-1381745441374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l+++L+ecA+a s+gdl  aq+l+++l++++s +g+p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++++++ev+P++kf+++ aN a
  OIS98485 174 LKHVLIECAKAESDGDLLTAQWLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSIYKSLRCKEPA---SFELLSYMHILHEVCPYFKFGYMSANGA 271
               689******************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a + +d++l++L ++pgE
  OIS98485 272 IAEAMKDEQRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSKSAyaRGGGLNIVGKRLSKLAESFKVPFEFHA-AAISASDVQLQNLGIRPGE 371
               ************************************************888899999************************.8999*************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               alaVn+++ lh+++desvs+e++rd++++lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++a+l+r+++eri+vE+++l+++ivn++ace
  OIS98485 372 ALAVNFAFVLHHMPDESVSTENHRDRLIRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDATLSRAHKERINVEQHCLAKDIVNIIACE 472
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g er+erhe l+kW++r+++aGF+p+pls+ +++++k+l++++ +  yr+ee++g+l+l W++r Lv+ +aW+
  OIS98485 473 GIERVERHELLGKWKSRFRMAGFSPYPLSSLVNSTIKALVENYCD-KYRLEERDGALYLAWMNRDLVASCAWK 544
               *******************************************95.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQASQRLRRS AMSDTLYQSV QETEASYLPQ FQMLDTQMTS INRTQGGNHS IQTYSDRYCT  60
MESSSPTGEY AVQNSISAVS FTPNGSLISH QESQSCLSDV HYSPDTNYNS PVSGSCITDD  120
VNDFRHKLKE LETVMLGPNS DVLDSCDNSL PSCMTSPEID CWRQMMEAIP RGDLKHVLIE  180
CAKAESDGDL LTAQWLISEL RQMVSVSGEP IQRLGAYILE GLVARLAASG SSIYKSLRCK  240
EPASFELLSY MHILHEVCPY FKFGYMSANG AIAEAMKDEQ RVHIIDFQIS QGSQWVTLIQ  300
AFAARPGGPP HIRITGIDDS KSAYARGGGL NIVGKRLSKL AESFKVPFEF HAAAISASDV  360
QLQNLGIRPG EALAVNFAFV LHHMPDESVS TENHRDRLIR LVKSLNPKVV TLVEQESNTN  420
TAAFFPRFLE TLDYYTAMFE SIDATLSRAH KERINVEQHC LAKDIVNIIA CEGIERVERH  480
ELLGKWKSRF RMAGFSPYPL SSLVNSTIKA LVENYCDKYR LEERDGALYL AWMNRDLVAS  540
CAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein