PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98418
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 360aa    MW: 40429.7 Da    PI: 4.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98418genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-102863261055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               rrRR++iN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  OIS98418 286 RRRREKINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 326
               9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MEQMGAFFDE EWESLTKLFS STETADFMLQ LHGDQGSLFA INARENAGSS YENGPPQLGD  60
DQHEANNNFQ YFSQESSITS CGSDGIFFTN NPSHDIDHDV NNQLLAINNQ TDDQSIDFFV  120
MDNKNNLENL SLNFPDDTND MDSSLCKEEM VRDQLDNVGI SPVLGKEIQL KRKFDKIALQ  180
SSSKEQKFKE ELPENPKKKS RGSAQDAQKN KKKTQPKGKK NQKITEINNE EGEDEETNNA  240
AIQNGQSSSC CSSEDDCNGG AISSKSKGKS RASRGAATDP QSLYARRRRE KINERLRILQ  300
NLVPNGTKVD ISTMLEEAVT YVKFLQLQIK LLSSDELWMY APIAYHGMDI GLYQKMMPSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291RRRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-32bHLH family protein