PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS98401
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 262aa    MW: 29624.2 Da    PI: 4.8755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS98401genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.3e-38101101100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l++++ + dam+s+++e++++ r PvyG+v+ i +l+qql+ + +el+++ ++
  OIS98401  10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLDDDDqKADAMKSIIFESDMWERFPVYGCVEYICHLRQQLQLALEELHYVYAQ 110
               7************************************************655549***************************************9998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD  60
DDQKADAMKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LALYREQQQQ  120
QQQLTLQCGV TSEIPFVNGI SMGPFFTSEG ESSEGGPKTK LLGSDSLFDH NNNSIAFPAS  180
DHAIFGFGVR DDQRDISHEH ECLINPFNNI MADDRQSYVE TKEACDSSSE SSWKDTQYLE  240
NLSQNELRNA AACLSLTSRV TL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-37LBD family protein