PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98296

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 406aa MW: 46406.8 Da PI: 5.4452

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98296	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.2	2.1e-36	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+ye+++d++++ ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +ll++i+ OIS98296 14 FIAKTYEMVDDPSTDPIVSWSSNNKSFIVWNPPDFARELLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFIRGEPHLLKNIH 101 9*************************************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k OIS98296 102 RRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDEAPCSANT LPPFIAKTYE MVDDPSTDPI VSWSSNNKSF IVWNPPDFAR ELLPRYFKHN 60 NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGEPHLLKNI HRRKPVHSHS VQNLHSVSSA 120 LTESERQGYK EDIEKLKHVI ESLHLELQGH KQDYQGLEMQ MQVFAERVQR VKHRQKNMLS 180 TLARTINKPG LALSLMPQLE MNERKRRLPG NSFLYHETGL EDNQPSSSQD STRENMDPTS 240 HLTLNKELLD QLESSLTFWE NILHDVDQNG MRRSSSVDLD ASISCADSPA ISYSQLYVDI 300 GSKICGIDMN SEPKGITVPE VALQEDQVVV IGTATNRPTG VNDVFWEQFL TENPGSTESD 360 VKPEREDIDS QKSESKTVEH GKSWWKMKSV NSLTEQLGHL TPAERT

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDEAPCSANT LPPFIAKTYE MVDDPSTDPI VSWSSNNKSF IVWNPPDFAR ELLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGEPHLLKNI HRRKPVHSHS VQNLHSVSSA  120
LTESERQGYK EDIEKLKHVI ESLHLELQGH KQDYQGLEMQ MQVFAERVQR VKHRQKNMLS  180
TLARTINKPG LALSLMPQLE MNERKRRLPG NSFLYHETGL EDNQPSSSQD STRENMDPTS  240
HLTLNKELLD QLESSLTFWE NILHDVDQNG MRRSSSVDLD ASISCADSPA ISYSQLYVDI  300
GSKICGIDMN SEPKGITVPE VALQEDQVVV IGTATNRPTG VNDVFWEQFL TENPGSTESD  360
VKPEREDIDS QKSESKTVEH GKSWWKMKSV NSLTEQLGHL TPAERT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	ERKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-113	HSF family protein

Link Out ? help Back to Top
Ensembl	OIS98296