PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98207

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 366aa MW: 39335 Da PI: 8.1816

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98207	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4.1e-42	73	148	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC vhsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa hnerrrk+ OIS98207 73 RCQVEGCQVDLSDAKAYYSRHKVCGVHSKSPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLACHNERRRKP 148 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MNGQWNSVME LGSVSSSGSN SSSADSLNGL KFGKKIYFEN VGGGSSPVTG AGNLPPASKR 60 GRGGLVQGGQ PPRCQVEGCQ VDLSDAKAYY SRHKVCGVHS KSPTVIVAGL EQRFCQQCSR 120 FHQLPEFDQG KRSCRRRLAC HNERRRKPPS GSLFSTHYGS LSSSIFENNS SRSGSFLLDF 180 SSHPHVNESS WPNTRASEQG WDHQSTASGK FLQRPWLNNS ETATSELVLQ GSATRTNYVP 240 SGECFSGVSD SSTGALSLLS NRSWGSRNPP SSLGANIDGI HTIQPSDSHG APTNHFSSPS 300 LRFKGNEASS SSHEMPSDLG LGQISQAADD QYCGELGIGQ QSGRQNMELD HSNGYHPSVQ 360 NVHWTL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MNGQWNSVME LGSVSSSGSN SSSADSLNGL KFGKKIYFEN VGGGSSPVTG AGNLPPASKR  60
GRGGLVQGGQ PPRCQVEGCQ VDLSDAKAYY SRHKVCGVHS KSPTVIVAGL EQRFCQQCSR  120
FHQLPEFDQG KRSCRRRLAC HNERRRKPPS GSLFSTHYGS LSSSIFENNS SRSGSFLLDF  180
SSHPHVNESS WPNTRASEQG WDHQSTASGK FLQRPWLNNS ETATSELVLQ GSATRTNYVP  240
SGECFSGVSD SSTGALSLLS NRSWGSRNPP SSLGANIDGI HTIQPSDSHG APTNHFSSPS  300
LRFKGNEASS SSHEMPSDLG LGQISQAADD QYCGELGIGQ QSGRQNMELD HSNGYHPSVQ  360
NVHWTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57920.1	1e-52	SBP family protein

Link Out ? help Back to Top
Ensembl	OIS98207