PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS98057

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 659aa MW: 72507.9 Da PI: 6.237

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS98057	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.5	1e-22	116	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+lt+sd+++ g +++p+ +a+++ ++ + tl +d +g++W++++iyr++++r++lt+GW Fv++++L +gD++vF + +++ +v OIS98057 116 FAKTLTQSDANNGGGFSVPRYCADTIfprldhsADPPVQ--TLLAKDVHGKTWKFRHIYRGTPRRHLLTTGWTTFVNSKKLVAGDSIVFL--RAENGDVCV 212 89*******************999985444444..8999******************************************..34788889 PP EEE- CS B3 95 kvfr 98 +++r OIS98057 213 GIRR 216 9998 PP
2	Auxin_resp	103.6	2.3e-34	261	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+++Prast+eF vk+++ve+a ++ ++ GmRfkmafe+eds ++Gt+ +v+ +dp+rWp+S+Wr+L+ OIS98057 261 AANLAASGQPFEVTFYPRASTPEFFVKASRVEAASQICWCSGMRFKMAFENEDSTMSWFMGTICSVQVADPIRWPDSPWRLLQ 343 7899**************************************************999********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MNTFMEEEEK WLDSKFWHAC AGNMVEMPAV NSIVFYFPQG HAEHACGNVE FRSDIRIPSY 60 IPCRVSGIKY MADQENDEVF AKIRLTPVSS NEVENVDDGV VAKSGLDNDQ EKPTSFAKTL 120 TQSDANNGGG FSVPRYCADT IFPRLDHSAD PPVQTLLAKD VHGKTWKFRH IYRGTPRRHL 180 LTTGWTTFVN SKKLVAGDSI VFLRAENGDV CVGIRRVKKG IAGGHDTSFV VPYGGFSAFL 240 RHDENKLMKR GKVKAESVIE AANLAASGQP FEVTFYPRAS TPEFFVKASR VEAASQICWC 300 SGMRFKMAFE NEDSTMSWFM GTICSVQVAD PIRWPDSPWR LLQVTWDEPD LLQHVKCVNP 360 WLVELVSDMP TVHFSPLSPS QKKPRLLQRS DFPLDGHLPM PGSPGNHLLS PNIPFGCLPN 420 DTPAGMQGAR HTQYGFSLSN LHLNKLHSSP FPVSFPPLDH AAATPSPSNS TLIPKPSSSN 480 DMSCLLTLGS STETVTKSDC DKAPQLVLFG QPIFTEQQIS LSSSGDTVSP VCARTSSSDG 540 NADKIGSISD ESGSTFDHRG LSEQNVEIGQ CKVFIESEDV GQTLDLSVLG SYEELYKKLS 600 NMFGIEISEM LNRVLYRDIT GAVKQLGNEP FSDFVKTARR LTLLTDTSSV GALGSRANQ

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MNTFMEEEEK WLDSKFWHAC AGNMVEMPAV NSIVFYFPQG HAEHACGNVE FRSDIRIPSY  60
IPCRVSGIKY MADQENDEVF AKIRLTPVSS NEVENVDDGV VAKSGLDNDQ EKPTSFAKTL  120
TQSDANNGGG FSVPRYCADT IFPRLDHSAD PPVQTLLAKD VHGKTWKFRH IYRGTPRRHL  180
LTTGWTTFVN SKKLVAGDSI VFLRAENGDV CVGIRRVKKG IAGGHDTSFV VPYGGFSAFL  240
RHDENKLMKR GKVKAESVIE AANLAASGQP FEVTFYPRAS TPEFFVKASR VEAASQICWC  300
SGMRFKMAFE NEDSTMSWFM GTICSVQVAD PIRWPDSPWR LLQVTWDEPD LLQHVKCVNP  360
WLVELVSDMP TVHFSPLSPS QKKPRLLQRS DFPLDGHLPM PGSPGNHLLS PNIPFGCLPN  420
DTPAGMQGAR HTQYGFSLSN LHLNKLHSSP FPVSFPPLDH AAATPSPSNS TLIPKPSSSN  480
DMSCLLTLGS STETVTKSDC DKAPQLVLFG QPIFTEQQIS LSSSGDTVSP VCARTSSSDG  540
NADKIGSISD ESGSTFDHRG LSEQNVEIGQ CKVFIESEDV GQTLDLSVLG SYEELYKKLS  600
NMFGIEISEM LNRVLYRDIT GAVKQLGNEP FSDFVKTARR LTLLTDTSSV GALGSRANQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIS98057