PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97366

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 231aa MW: 25067.5 Da PI: 8.7169

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97366	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.3e-41	50	149	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqql++l+ael+++++e OIS97366 50 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQLQTLQAELNAIRSE 149 7**********************************************************************************************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MSRERERLDE IGKKLKTEID ASSQLHMQQQ MGRRQILGPT VGTTLNTITP CAACKLLRRR 60 CAEECPFSPY FSPHEPQKFA AVHKVFGASN VSKLLLEVPV GQRADAANSL VYEANVRLRD 120 PVYGCMGAIS TLQQQLQTLQ AELNAIRSEI LRYKYREAAN SLIASISTSV ADQLPQAPPT 180 PPPPPPPLPS VVVVSSSSST SSVSSLYTPP SSAGANFSAA IHNNSISYFD Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-78	LBD family protein

Link Out ? help Back to Top
Ensembl	OIS97366