PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97315

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-PHD

Protein Properties

Length: 747aa MW: 82741.3 Da PI: 5.2754

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97315	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.8	1.8e-13	569	619	5	55
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 t+ + +++L e F++n+yp+++++e+L k+lgLt qV+ WF N R + OIS97315 569 KTYGEGAIKRLYESFKENQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 619 566777899**************************************9755 PP
2	PHD	38	3.8e-13	224	279	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k OIS97315 224 FCAKCGAkdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPDdeGWLCPGCDCK 279 69999966566*****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MRTQLEDQTE MSTLGNTAVS PGKVARTTAR SHNTASAGKM SENPGVEQLG DACGNAGQNL 60 NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSGA SEANNTVVTH EANEEKKRKR 120 RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA 180 KAHIFRYKLK IRDLFQRVDT LLTQGRLPES LFDNEGEIDS EDIFCAKCGA KDLPADNDII 240 LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW 300 EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSGDESS SDESDFFSAS 360 EDLEEVPPKD DELLGLPSED SEDDDYTPDD PDKDEPVKTE SSSSDFTSDS EDLGLIVDTN 420 RLPGDELGVS SSVDNSKHSS ASQEEKPKGG RAKRNSLNDE LSDLMQSHSP LVSCKRHIER 480 LDYKKLHDET YGNESSDSSD EDFEGDPLPK VREIRSAKAA MTSPNSTPAD TKYQSGKKKV 540 SRHTDRGLCK KLKIGGMDTS EPHSSGKKKT YGEGAIKRLY ESFKENQYPD RDAKEKLGKE 600 LGLTAHQVSK WFENARHCHR HSSRWDTIMS QKVSKESPSS PNIMGEPLGT ESISTINNVL 660 CNGVGKMEPP KQCLNGEKCH AIDKSEGDLL IQEASGKKSR KPKAKNDTTD RGLDDTPTNK 720 TSKKQNTQIN SPNSQNVRRS SRLQKQG

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MRTQLEDQTE MSTLGNTAVS PGKVARTTAR SHNTASAGKM SENPGVEQLG DACGNAGQNL  60
NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSGA SEANNTVVTH EANEEKKRKR  120
RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA  180
KAHIFRYKLK IRDLFQRVDT LLTQGRLPES LFDNEGEIDS EDIFCAKCGA KDLPADNDII  240
LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW  300
EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSGDESS SDESDFFSAS  360
EDLEEVPPKD DELLGLPSED SEDDDYTPDD PDKDEPVKTE SSSSDFTSDS EDLGLIVDTN  420
RLPGDELGVS SSVDNSKHSS ASQEEKPKGG RAKRNSLNDE LSDLMQSHSP LVSCKRHIER  480
LDYKKLHDET YGNESSDSSD EDFEGDPLPK VREIRSAKAA MTSPNSTPAD TKYQSGKKKV  540
SRHTDRGLCK KLKIGGMDTS EPHSSGKKKT YGEGAIKRLY ESFKENQYPD RDAKEKLGKE  600
LGLTAHQVSK WFENARHCHR HSSRWDTIMS QKVSKESPSS PNIMGEPLGT ESISTINNVL  660
CNGVGKMEPP KQCLNGEKCH AIDKSEGDLL IQEASGKKSR KPKAKNDTTD RGLDDTPTNK  720
TSKKQNTQIN SPNSQNVRRS SRLQKQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	121	KKRKRR
2	116	122	KKRKRRK
3	116	123	KKRKRRKK
4	116	124	KKRKRRKKK
5	117	123	KKRKRRK
6	117	122	KRKRRK
7	118	124	KKRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-82	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	OIS97315