PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS97027
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-PHD
Protein Properties Length: 701aa    MW: 79593.6 Da    PI: 7.4582
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS97027genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.32.2e-12480524953
               HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
               ++ +eeL ++F+ n  ps+e+re L+++lgL+ ++V  WF+N R+
  OIS97027 480 PDAVEELRRAFADNELPSREMRENLSTQLGLELEKVNKWFKNARY 524
               6889***************************************97 PP
2PHD34.83.7e-12208263151
               SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
       PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
               +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p +   w+C+ Ck+k
  OIS97027 208 ICAKCKLQEAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 263
               588898844445********56*******************99999*******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    
MAGKTNKDMH KTVANLSQVK DALRRLDKKR SKLKSKSHGR AARVSSSKRT DAGEGKRKEI  60
PQKAKSSKKQ SKLSCRGEEL QACNSKVNLK HENVDTGSEK LKRRRRKKRK HNADPDDVSR  120
LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKEILK CKLGIREIVH  180
RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQKCLD  240
PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES  300
LLCPEQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK  360
QEDGSSGKDY LSEQIAGLDY EETTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE  420
DEDWGPGKRK RRRKESESDA ASTLITLLES EKSRPEKRAD DEEKESFDKP AKRAIFRIPP  480
DAVEELRRAF ADNELPSREM RENLSTQLGL ELEKVNKWFK NARYMALKAR KQVESAEPCQ  540
VTSPTTSEGC VSETVKDKPA DQISSRDEEE NAAHACNLER SPNEETANLM ISTSKKKHGK  600
KAVKPLIDKL ETTVEFGDDV SLKLLRERSK KERRKLNSKE RERIQEAEAE MQKLCGIKDK  660
IARLQDILLR LPNRRFRRAD ASRVDESSVI FVPVAELQEK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101108LKRRRRKK
2101110LKRRRRKKRK
3102107KRRRRK
4102108KRRRRKK
5102110KRRRRKKRK
6103109KRRRRKK
7103133RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
8104110KRRRRKK
9104109RRRKKR
10104110RRRKKRK
11104134RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
12105135RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
13106136RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
14107137RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
15428433KRRRRK
16428434KRRRRKK
17429433RKRRR
18429435RKRRRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-98HB-PHD family protein