PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97027

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-PHD

Protein Properties

Length: 701aa MW: 79593.6 Da PI: 7.4582

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97027	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.3	2.2e-12	480	524	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +eeL ++F+ n ps+e+re L+++lgL+ ++V WF+N R+ OIS97027 480 PDAVEELRRAFADNELPSREMRENLSTQLGLELEKVNKWFKNARY 524 6889***************************************97 PP
2	PHD	34.8	3.7e-12	208	263	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+ +fH+kCl+++l++e++p + w+C+ Ck+k OIS97027 208 ICAKCKLQEAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 263 588898844445******56***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MAGKTNKDMH KTVANLSQVK DALRRLDKKR SKLKSKSHGR AARVSSSKRT DAGEGKRKEI 60 PQKAKSSKKQ SKLSCRGEEL QACNSKVNLK HENVDTGSEK LKRRRRKKRK HNADPDDVSR 120 LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKEILK CKLGIREIVH 180 RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQKCLD 240 PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES 300 LLCPEQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK 360 QEDGSSGKDY LSEQIAGLDY EETTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE 420 DEDWGPGKRK RRRKESESDA ASTLITLLES EKSRPEKRAD DEEKESFDKP AKRAIFRIPP 480 DAVEELRRAF ADNELPSREM RENLSTQLGL ELEKVNKWFK NARYMALKAR KQVESAEPCQ 540 VTSPTTSEGC VSETVKDKPA DQISSRDEEE NAAHACNLER SPNEETANLM ISTSKKKHGK 600 KAVKPLIDKL ETTVEFGDDV SLKLLRERSK KERRKLNSKE RERIQEAEAE MQKLCGIKDK 660 IARLQDILLR LPNRRFRRAD ASRVDESSVI FVPVAELQEK R

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MAGKTNKDMH KTVANLSQVK DALRRLDKKR SKLKSKSHGR AARVSSSKRT DAGEGKRKEI  60
PQKAKSSKKQ SKLSCRGEEL QACNSKVNLK HENVDTGSEK LKRRRRKKRK HNADPDDVSR  120
LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKEILK CKLGIREIVH  180
RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQKCLD  240
PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES  300
LLCPEQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK  360
QEDGSSGKDY LSEQIAGLDY EETTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE  420
DEDWGPGKRK RRRKESESDA ASTLITLLES EKSRPEKRAD DEEKESFDKP AKRAIFRIPP  480
DAVEELRRAF ADNELPSREM RENLSTQLGL ELEKVNKWFK NARYMALKAR KQVESAEPCQ  540
VTSPTTSEGC VSETVKDKPA DQISSRDEEE NAAHACNLER SPNEETANLM ISTSKKKHGK  600
KAVKPLIDKL ETTVEFGDDV SLKLLRERSK KERRKLNSKE RERIQEAEAE MQKLCGIKDK  660
IARLQDILLR LPNRRFRRAD ASRVDESSVI FVPVAELQEK R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	108	LKRRRRKK
2	101	110	LKRRRRKKRK
3	102	107	KRRRRK
4	102	108	KRRRRKK
5	102	110	KRRRRKKRK
6	103	109	KRRRRKK
7	103	133	RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
8	104	110	KRRRRKK
9	104	109	RRRKKR
10	104	110	RRRKKRK
11	104	134	RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
12	105	135	RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
13	106	136	RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
14	107	137	RRRRKKRKHNADPDDVSRLQRRTRYLLIKMK
15	428	433	KRRRRK
16	428	434	KRRRRKK
17	429	433	RKRRR
18	429	435	RKRRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-98	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	OIS97027