PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96941

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 280aa MW: 32192.7 Da PI: 5.5171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96941	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.3e-13	87	138	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h e+Er+RR+++N+ + Lr+l+P++ + ++ + a+i A+e++++L+ OIS96941 87 QRMTHIEVERNRRKQMNEHLLVLRSLMPTS---YVQRGDQASIIGGATEFLRELE 138 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MEEKENNQPY LPTIFPSLNH QNPEMVNEEA MMVSQNEEKF KEFSDKVENA TQIRFLIGEN 60 LENGKANENK KKRKRRRIKS SEEVENQRMT HIEVERNRRK QMNEHLLVLR SLMPTSYVQR 120 GDQASIIGGA TEFLRELEQL LQCLESQKRR KLYGDDSLLM EIQNPPFFAP LPLANEIYEG 180 GIQEEIAESK SCLADVEVKL IGFNAMIKIL SKRRPGQLIS TISALEDLQL NIIHTNITTI 240 DQTVLYSFNV KISGETKFTA DGIANLVQQI FSFIYANNAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	KKKRKRR
2	71	77	KKKRKRR
3	71	76	KKRKRR
4	72	77	KRKRRR
5	73	77	RKRRR
6	74	78	KRRRI
7	88	99	RMTHIEVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	2e-79	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS96941