PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96667
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 263aa    MW: 28727.3 Da    PI: 9.7936
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96667genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-14101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
         OIS96667 101 AWTEEEHRTFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 145
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MRRKCSHCGK IGHNSRTCSS FKVGAAISCG LRLFGVQVLD NISSSSSSSS SSSSSSSHDT  60
HLKKSLSLDC LSSSEKTSCT NGSLSQCLLG QAHQHRRKGV AWTEEEHRTF LVGLEKLGKG  120
DWRGISRNFV TTRTPTQVAS HAQKYFLRLS THHHLNNKKR RSSLFDLVRS NNKNHLDAIT  180
DYINTKPDYA NSLTSLNEVC QETSLSNLMD LNSASHHQMV SSSTIMSNSP VAAALDLELS  240
LAAPTNVDKN KPNTFLIGPI PVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-43MYB_related family protein