PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96460

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 412aa MW: 45354.5 Da PI: 5.5171

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96460	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ OIS96460 4 ICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalserHSR 44 7*****************************65777777776 PP
2	zf-B_box	22.7	2e-07	46	78	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 +C++++++++ C + + lC++C ++H + OIS96460 46 LICERCNSQPAVVRCIEEKASLCQNCDWSGHAS 78 68*****************************65 PP
3	CCT	58.6	2.1e-20	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRY+eK+ktRkF+K++rY sRKa+A+ R RvKGrFvk+ OIS96460 356 RINAVLRYREKKKTRKFDKRVRYVSRKARADVRRRVKGRFVKAG 399 6689*************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGYICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSE RHSRTLICER CNSQPAVVRC 60 IEEKASLCQN CDWSGHASSS SSGSRHMRQA LSSYTGCPSA AELSNIWSFL LDDPSIGASC 120 EQRMGTMTIK DNRSRDVQGP QGKENSQNMR AAVEVNDMDI SEKSNLLVES SMPTLDNKQH 180 HVEPPIGSSN SALSKGGYMG AKGSSLFEED PYCDNLIMDA VDLSIENYEE LFGASLNYPD 240 ELFENENFDG LFEMKDIKSA DSNCRGANAA EGSPIARVNM VQPTCSNAES ADSAMSCKTD 300 SILYFARQSS LSFSNQTGES TAGDHQDCGV SPMLLIGEPP PWGPPCPEPS SPSTSRINAV 360 LRYREKKKTR KFDKRVRYVS RKARADVRRR VKGRFVKAGD AYDYDPLPTR SY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGYICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSE RHSRTLICER CNSQPAVVRC  60
IEEKASLCQN CDWSGHASSS SSGSRHMRQA LSSYTGCPSA AELSNIWSFL LDDPSIGASC  120
EQRMGTMTIK DNRSRDVQGP QGKENSQNMR AAVEVNDMDI SEKSNLLVES SMPTLDNKQH  180
HVEPPIGSSN SALSKGGYMG AKGSSLFEED PYCDNLIMDA VDLSIENYEE LFGASLNYPD  240
ELFENENFDG LFEMKDIKSA DSNCRGANAA EGSPIARVNM VQPTCSNAES ADSAMSCKTD  300
SILYFARQSS LSFSNQTGES TAGDHQDCGV SPMLLIGEPP PWGPPCPEPS SPSTSRINAV  360
LRYREKKKTR KFDKRVRYVS RKARADVRRR VKGRFVKAGD AYDYDPLPTR SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-109	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIS96460