PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96409

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 438aa MW: 48795.5 Da PI: 6.3576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96409	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.3	2.7e-08	269	316	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OIS96409 269 AHSLAERVRREKIGERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 316 8***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MDKKNMFLNN VNTMNELNSF YNPSWENDPF ESTLSSIVSS PVTSNIMPSN TSGDNFVLRE 60 LIGKLGNICN SGEISPISYV NSTNNSCYTT PLNSPPRLNL SNFDHQINGN LQLLGVNHMS 120 NSTNLAHFSV DSEFVNRNVP NLESGKLSRV SSSKCINVSG SQLGVQESEF GESMENSSVS 180 EQIPLGNDAN FKKRKSAPKK KAKETNAKNT NVSTEIFESS AKRSKSDEKS GSAKDAAEEK 240 EQNKDNQKTT EPPKDYIHVR ARRGQATDAH SLAERVRREK IGERMKFLQD LVPGCSKVTG 300 KAVMLDEIIN YVQSLQCQVE FLSMKLSNMN PRMDFNAESL LSKNMFQSAE SLHHNMHPSE 360 TSAAFPYEFQ SQQCSNGYMA RNVNIMQLPH MEEFVEQSPQ VPTFFGDDLH SVIQMGFGQI 420 QPQNFPGNIS SAQMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MDKKNMFLNN VNTMNELNSF YNPSWENDPF ESTLSSIVSS PVTSNIMPSN TSGDNFVLRE  60
LIGKLGNICN SGEISPISYV NSTNNSCYTT PLNSPPRLNL SNFDHQINGN LQLLGVNHMS  120
NSTNLAHFSV DSEFVNRNVP NLESGKLSRV SSSKCINVSG SQLGVQESEF GESMENSSVS  180
EQIPLGNDAN FKKRKSAPKK KAKETNAKNT NVSTEIFESS AKRSKSDEKS GSAKDAAEEK  240
EQNKDNQKTT EPPKDYIHVR ARRGQATDAH SLAERVRREK IGERMKFLQD LVPGCSKVTG  300
KAVMLDEIIN YVQSLQCQVE FLSMKLSNMN PRMDFNAESL LSKNMFQSAE SLHHNMHPSE  360
TSAAFPYEFQ SQQCSNGYMA RNVNIMQLPH MEEFVEQSPQ VPTFFGDDLH SVIQMGFGQI  420
QPQNFPGNIS SAQMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	204	PKKKAKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-77	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS96409