PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96048

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 909aa MW: 100379 Da PI: 6.8809

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96048	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	1.9e-18	322	422	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l+++++ OIS96048 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLLMGFR 420 99************************555567778***********99899999999.*******************876.8888888887 PP -S CS B3 98 rk 99 ++ OIS96048 421 KA 422 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence
MDSKICMNGV CGATSSVEWK KGWPLKSGEF ACVCDKCGTA YEQLIFCDLF HSEDTGWREC 60 ISCGKRLHCG CIASSSLLEL LDSGGINCIS CARSCQLHAT PNPVKAKALG TSNSNSVGET 120 PSTSLGSQMN GSEPNKREGS DGFDPVLVLP HQNDNTNKPI GQIKMEEAFH PAGESGCTFS 180 SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSLNTKL FPATVDEGDL 240 NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP 300 RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR 420 KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSVNLSS 480 KHFNSGDFSW YLTEKNEGRN ADGTFSPSLP VSDRKRSRNI GSKSKRLLID SDEALELKLS 540 WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRSSGEQE QWAQCDNCFK 600 WRRLPADYLL PPQWTCQDNI FDHSRCSCSV PDDLTPRELE YLLKMDKDLK KRRSAAGQRT 660 MHAHDSSDLD SQANGTGVAG DVREPGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP 720 TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEVD 780 PSDKERSGSE TLPRGHSSNQ LQKLPETSKS QLDLNCHPNR EDTGSSHLSM MSLLQQASLP 840 LETYLRQNGL TSLVSEQQGS SGSQGLPPDT RESEVHIHED QCFASTTQEQ EQEGAKENSE 900 PDQSGKDNS

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence

MDSKICMNGV CGATSSVEWK KGWPLKSGEF ACVCDKCGTA YEQLIFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCIS CARSCQLHAT PNPVKAKALG TSNSNSVGET  120
PSTSLGSQMN GSEPNKREGS DGFDPVLVLP HQNDNTNKPI GQIKMEEAFH PAGESGCTFS  180
SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSLNTKL FPATVDEGDL  240
NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSVNLSS  480
KHFNSGDFSW YLTEKNEGRN ADGTFSPSLP VSDRKRSRNI GSKSKRLLID SDEALELKLS  540
WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRSSGEQE QWAQCDNCFK  600
WRRLPADYLL PPQWTCQDNI FDHSRCSCSV PDDLTPRELE YLLKMDKDLK KRRSAAGQRT  660
MHAHDSSDLD SQANGTGVAG DVREPGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEVD  780
PSDKERSGSE TLPRGHSSNQ LQKLPETSKS QLDLNCHPNR EDTGSSHLSM MSLLQQASLP  840
LETYLRQNGL TSLVSEQQGS SGSQGLPPDT RESEVHIHED QCFASTTQEQ EQEGAKENSE  900
PDQSGKDNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	646	653	DKDLKKRR
2	731	742	KRRFKTLMMRKK
3	731	744	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein

Link Out ? help Back to Top
Ensembl	OIS96048