PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS95809

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 680aa MW: 75243 Da PI: 4.9922

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS95809	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.7e-14	484	530	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ OIS95809 484 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 530 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MTEIPPNSQM QTMLQKAVQS VQWTYTLFWQ LCPQQGVLAW RDGYYNGAIK TRKTVQPMEV 60 SAEEASLHRS QQLRELYESL SAGESNQPAR RPSAALSPED LTESEWFYLM CVSFSFPPGI 120 GLPGKAYSKK HHIWIMGANE VDSKVFCRAI LAKSARIQTV VGIPLLDGVL ELGTTERVQE 180 EIGFINHVKS FFTEQQQPQL PKPALSEHST SNPTTFSEPH FYSGNTSLSA NVDVAHQDGG 240 AAGEEDEEEE DEEEEDDEAE LDSDSIAIQS AANPIAVEAS ELMQLDMSEA IQLGSPDDGS 300 DNMDSDFHLV GAGNTADYQR QADSFKAETA ISWAHFQDLQ QLPGDSSYDE LSQEDTHYSQ 360 TVSTILEHLS NQSSKFSSTT MGCISHDSAQ SAFALCPSTT VCSPNPAHCR RRRHDDSLLD 420 SGGASPSSQR LLKSILFTVP FLHTKYQSEA SPKSRDVATV DSSSTASRFR KGCSITSQEE 480 PSGNHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKVQDLEARA 540 RHTEQSKDAD KKSGTATMKV LQGRGKRRMN TVDGSVGGGQ AKITASPPST TEDEEVVQVE 600 VSIIESDALV ELRCAYKEGL LLNVMQMLRE LKVEVVAIQS SLNNGVFLAE LRAKVKENIY 660 GRKASILEVK RSIHQIIPRD

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MTEIPPNSQM QTMLQKAVQS VQWTYTLFWQ LCPQQGVLAW RDGYYNGAIK TRKTVQPMEV  60
SAEEASLHRS QQLRELYESL SAGESNQPAR RPSAALSPED LTESEWFYLM CVSFSFPPGI  120
GLPGKAYSKK HHIWIMGANE VDSKVFCRAI LAKSARIQTV VGIPLLDGVL ELGTTERVQE  180
EIGFINHVKS FFTEQQQPQL PKPALSEHST SNPTTFSEPH FYSGNTSLSA NVDVAHQDGG  240
AAGEEDEEEE DEEEEDDEAE LDSDSIAIQS AANPIAVEAS ELMQLDMSEA IQLGSPDDGS  300
DNMDSDFHLV GAGNTADYQR QADSFKAETA ISWAHFQDLQ QLPGDSSYDE LSQEDTHYSQ  360
TVSTILEHLS NQSSKFSSTT MGCISHDSAQ SAFALCPSTT VCSPNPAHCR RRRHDDSLLD  420
SGGASPSSQR LLKSILFTVP FLHTKYQSEA SPKSRDVATV DSSSTASRFR KGCSITSQEE  480
PSGNHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKVQDLEARA  540
RHTEQSKDAD KKSGTATMKV LQGRGKRRMN TVDGSVGGGQ AKITASPPST TEDEEVVQVE  600
VSIIESDALV ELRCAYKEGL LLNVMQMLRE LKVEVVAIQS SLNNGVFLAE LRAKVKENIY  660
GRKASILEVK RSIHQIIPRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	494	ERRRRE
2	490	495	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-95	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS95809