PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDY05476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 327aa MW: 35703.2 Da PI: 8.2128 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 5.2e-19 | 239 | 272 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C++tkTp+WR+gp g+ktLCnaCG++yr+ + RDY05476.1 239 CMHCQVTKTPQWREGPMGPKTLCNACGVRYRSGR 272 99*****************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence |
DIANMKDSWF FDNNFNGLSD EIFDDVVNFF DFPLEDVDAN VVEEDLDAQF KCLEDPRFDV 60 FSASSAGLCG KAQNEKPQLG MGFSASVSIL STVMCNGISP IKQLAMAPGP TYGIGKTIPN 120 QNASFNGKDL HQFQMYSPVS VFESSSSSSA ENSNVDRPPI PVKRARGKRQ RLSSFSPLFS 180 SPFILISPAL QKHQRTGASE SDFGTNVAGN LSNKEKRQRK KDLSLLSDEV LESDAPRKCM 240 HCQVTKTPQW REGPMGPKTL CNACGVRYRS GRLFPEYRPA ASPTFVASLH SNCHKKVVEM 300 RSRGIQGAVA VRGSMSASSN LHGSSVG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 214 | 219 | KEKRQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08010.2 | 2e-42 | GATA family protein |