PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY05326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | ARF | ||||||||
Protein Properties | Length: 909aa MW: 100770 Da PI: 6.3916 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.2e-23 | 192 | 293 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l RDY05326.1 192 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WNEKNQL 286 99*****************************8544444..48************************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ RDY05326.1 287 LLGIRRA 293 ****997 PP | |||||||
2 | Auxin_resp | 118.1 | 7.4e-39 | 318 | 401 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g++dld+vrWpnS+Wrs+k RDY05326.1 318 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGITDLDSVRWPNSHWRSVK 401 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence |
MAISENVPPV LQVVLFLGVD YGVSALATSW WRRMLGECLC NGLKQIEGSG FELGEKQKKV 60 KLDDMKLSTS GLGQQGHEGG EKKCLNSELW HACAGPLVSL PTAGTRVVYF PQGHSEQVSA 120 TTNREIDGHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKDTFLPME 180 LGIPSKQPSN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDV 240 EWKFRHIFRG QPKRHLLTTG WSIFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM 300 PSSVLSSDSM HIGLLAAAAH AAATNSCFTV FYNPRASPSE FVIPLSKYIK AVYHTRISVG 360 MRFRMLFETE ESSVRRYMGT ITGITDLDSV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE 420 IEPLTTFPMY PSLFPLRLKR PWHPGTSSLH DGRDEATNGL MWLRGGSVDQ GLNTLNYQGA 480 GMLPWMQQRL DPTLLGNDQN QQYQAMLAAG LQNLGSGYLM KQQMMNFQQP FHCLQQSGNN 540 NSPLQLQHQQ AIQQSVSSNM LQPQAHVMTE NLSQHLLQKP HNNQEVQAQQ QPHTYQDALL 600 IPSDQLHQRQ HSGVPSPSYS KPDFLDSSMK FPASVPPGQN MLSSLCPEGS GSLLNLSRSG 660 QSLLTEQLLP QQQWTQKYAP VQVNAYGSSM SHAQYPGKDS AMVLPHCNSD AQNPTLFGVN 720 IDSSGLLLPT TVPGYTTSSA DTNSSTMPLG ESGFQGSLYG CMQDSAELLR SAGHVDPQNQ 780 TQTFVKVYKS GSVGRSLDIS RFSSYHELRE ELAQMFGIEG KLEDPLRSGW QLVFVDREND 840 VLLLGDDPWE SFVNNVWYIK ILSPEDIQKM GEQAVESLAL SSGQRLNGTG AESQDIVSGP 900 PSIGSLEVE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | ARF family protein |