PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY02301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 22778.4 Da PI: 9.6001 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.4 | 5.3e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C++dCv++p++ p++q++++ +++k++G++ +++l++a+p++ r+ +++sl+yeA+ r+ +P yG++g+++++++ +q+++++ RDY02301.1 4 SCNGCRILRKGCSEDCVIRPCLewincPKAQANATLFLAKFYGRAGLVNLINAAPQHLRPGVLKSLMYEACGRIANPTYGSLGLFWTGEWAQCQAAVDA 102 6************************************************************************************************99 PP DUF260 95 allkee 100 +l +++ RDY02301.1 103 VLSGAQ 108 988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MKMSCNGCRI LRKGCSEDCV IRPCLEWINC PKAQANATLF LAKFYGRAGL VNLINAAPQH 60 LRPGVLKSLM YEACGRIANP TYGSLGLFWT GEWAQCQAAV DAVLSGAQIN VVESSHSQVI 120 GARGNKHVPS VLGISHVSKV KGKGKLKRTE NVIMPKPRVG SVNSVALWKP TSSHDLRGSK 180 GDNEEIMEAL LVSQDKPSQN GGAKLDLELT LG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-61 | LBD family protein |