PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDX94285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 720aa MW: 79793.7 Da PI: 6.8153 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.9e-23 | 132 | 232 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF + + ++l RDX94285.1 132 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGEHGQL 226 99****************************9543..445569************************************************..4489999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r RDX94285.1 227 RVGVRR 232 ****98 PP | |||||||
2 | Auxin_resp | 100.6 | 2.2e-33 | 258 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr+ s+F+v ++k+++a+++k+ vGmRfkm+fe++ds+err+sGt+vg d++p W+nS+WrsLk RDX94285.1 258 ASHAVMTRTMFLVYYKPRT--SQFIVGLNKYLEAVNNKFLVGMRFKMRFEGDDSPERRFSGTIVGAGDVSP-GWSNSQWRSLK 337 689***************6..9*************************************************.*********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 720 aa Download sequence |
MAHLECNLRG PGSGSSQPEK GLKDDDLYRE LWKLCAGPLV DVPRTGDRVF YFPQGHMEQL 60 QASTDQELNQ EIPHFNLPSK IFCRVVNIQL LAEQDTDEVY ACIALLPESD QTEPANPDPS 120 VSEAPKQKFH SFCKILTASD TSTHGGFSVL RKHATECLPP LDMTQATPTQ ELAAKDLHGF 180 EWKFKHIYRG QPRRHLLTTG WSTFVASKRL VAGDAFVFLR GEHGQLRVGV RRLARQQSPM 240 PSSVISSQSM HLGVLATASH AVMTRTMFLV YYKPRTSQFI VGLNKYLEAV NNKFLVGMRF 300 KMRFEGDDSP ERRFSGTIVG AGDVSPGWSN SQWRSLKVQW DEPATIPRPE RVSCWEIEPF 360 VASTALNVTQ PAVKGKRSRP ADVSSSGGRL VLTASGFWYH GSSHSHELTQ LGAATAEVQS 420 KENQVVACSL RQKDINSNNP INANNSSSSS RVRVEGVWSS PHLNVTSNLF SDPNNNNGTS 480 ALSSISTYPN VPSKSSDGPT CDRVEDGKKT ENPLDCWLFG VNLSNNCSNV ISPSSEREVR 540 GPSSSIVPSG PKESIPAAAC ETERVQSPNY SLSNKGQKQI ISEASPIEWQ NKQATVPSMR 600 TRIKVQMQGV AVGRAFDLTT LSGYDDLIDE LEKLFDIRGE LRSQNKWAVT FTDDENDMML 660 AGDDPWLEFC NIVKRIFICS REDLKKMKCC KLPASSSEVE ETLLSPDSQN RDETQQSQMA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |