PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX94197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 26971.2 Da PI: 8.4631 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.6e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H RDX94197.1 66 FSCTYCKREFSTSQALGGHQNAH 88 89******************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MKLKEKCLKP ELKKACNSKR GVVLNSTKFS KDDMTQEPLV NKVVDSSLSD SEGVGDENRK 60 GEAKTFSCTY CKREFSTSQA LGGHQNAHKQ ERALAKRHQG FDAGGFGYFP YYSYPNFYNS 120 HSLYGGSFNK ALGVRTESMI HKHPWTPQYD HTWLRRDHRI PNKSIFDEFE IMKSDATLMP 180 RDDDNGNANG RTLSLFPNSA TNSLTHLVNT TTLATKIDDD SMPEETSKGA SCNLDLSLKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 4e-16 | C2H2 family protein |