PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX90629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16886.2 Da PI: 8.9956 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.2 | 2.3e-37 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC+ +rrkC++dC+++pyfp+++p+++a v++++G snv k+lk++p r +a++sl+yeA++r++dP+yG++g+i++l qq++++++el+++++ RDX90629.1 5 RCAACRNQRRKCPSDCIFSPYFPSNDPQRYASVRRIYGGSNVGKMLKQIPLYVRAHAADSLYYEAQCRIQDPIYGCYGIISRLVQQIHNTETELVKIQA 103 6*********************************************************************************************99987 PP DUF260 100 e 100 + RDX90629.1 104 Q 104 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence |
MISGRCAACR NQRRKCPSDC IFSPYFPSND PQRYASVRRI YGGSNVGKML KQIPLYVRAH 60 AADSLYYEAQ CRIQDPIYGC YGIISRLVQQ IHNTETELVK IQAQNSILKL QNPQVEYVIN 120 MDDLFAQRNM GQFQFGDHSS QTHWFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-44 | LBD family protein |