PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX89221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LSD | ||||||||
Protein Properties | Length: 215aa MW: 22721.3 Da PI: 6.4619 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.5 | 4.6e-13 | 96 | 120 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V RDX89221.1 96 CSGCRNLLVYPVGATSVCCAVCNAV 120 ************************9 PP | |||||||
2 | zf-LSD1 | 46 | 8.6e-15 | 135 | 159 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV RDX89221.1 135 CGGCHTLLMYIRGATSVQCSCCHTV 159 ************************9 PP | |||||||
3 | zf-LSD1 | 41.1 | 3e-13 | 173 | 197 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V RDX89221.1 173 CGNCRMLLMYQYGARSVKCAVCNFV 197 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
LQNTSSSDQA ITLIPSGLYL SAKEEAPHLT LTLPFDLLAP SASRLSLELK IWETVTLAEK 60 DNIFESFIMP VPLAPYPTPP APYTPPANGA QSQLVCSGCR NLLVYPVGAT SVCCAVCNAV 120 TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL 180 MYQYGARSVK CAVCNFVTSV GVSATASTTE QKFST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-59 | LSD family protein |