PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX87173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25031.4 Da PI: 6.8472 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.2 | 4.1e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +P++Gavg++++++++++q+++e+ RDX87173.1 2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPINGAVGLLWTGNWHVCQAAVET 100 6***********************************************************************************************999 PP DUF260 95 all 97 +l+ RDX87173.1 101 VLR 103 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEPQR 60 PALFQSLLFE ACGRTVNPIN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLGLDAPA 120 DDASEGEVTC TDKWKVRDPN PNFRFPGSRS DKVASDCKRK RCDELAKFQT TADLNLRLTP 180 SFGCGHEIRR SGSPSMNSEE SGTTTACLES GIGDHYAADG DRKVLNLFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-83 | LBD family protein |