PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDX80746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 608aa MW: 66676.6 Da PI: 7.5871 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.6e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ l RDX80746.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGMCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL--RAENGDL 215 89****************************986445444..8************************************************..4488999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ RDX80746.1 216 CVGIRRA 222 ****997 PP | |||||||
2 | Auxin_resp | 109.8 | 2.8e-36 | 277 | 359 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++ a ++ +FevvY+Pra+++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++++ +dp+rWp+S+Wr+L+ RDX80746.1 277 VTCAVNARPFEVVYYPRATSPEFCVKASLVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSLQVADPIRWPDSPWRLLQ 359 66778999*************************************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 608 aa Download sequence |
MFTVMDSMER GSERCLDSQL WHACAGAMVQ MPGLNTKLFY FPQGHAEHAH GKVDFGQARV 60 PVPAFIPCRL SGMKYMADPD TDEVYVKMRL TPLREHELDL EDGCFLGNTG VEGQEKPPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSAEPPVQT IIAKDMHGMC WKFRHIYRGT 180 PRRHLLTTGW SNFVNQKRLV AGDSIVFLRA ENGDLCVGIR RAKKGIGGGA EFSSGWNPLF 240 GGGSAFLCGT EGSLVSGAKG ADDMVGRVPA ESVLEAVTCA VNARPFEVVY YPRATSPEFC 300 VKASLVKAAM QIQWCSGMRF KMPFETEDSS RISWFMGTIS SLQVADPIRW PDSPWRLLQV 360 VWDEPDLLQN VKCVNPWLVE LVSNMPTFNL SAYSPPRKKQ RFIQDPYFQV INQLPMPSFS 420 SNVLNYTNSL CTIQDNNSSA GIQGARHAQF GLSPSDFPFN KLQADMLLGG FSRLDHAAQP 480 VRPPCGTYKN NTTTKANVDI SCLLTVGNPG QNFKESNERK APHILLFGKL ITTEQKSSNT 540 SSGSTTGNSV SEGNSLKTSK SNASDGLGCA LHQGSPIENN SDGGSPWYKD QHKSDLGTDK 600 VNTLCIAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |