PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX77688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | ARF | ||||||||
Protein Properties | Length: 931aa MW: 103884 Da PI: 6.8532 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.8e-23 | 142 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.....E-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.....ldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ RDX77688.1 142 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIwqcifFNRN 238 99*****************************8544444..48***********************************************9666644444 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ RDX77688.1 239 EKNQLLLGIRRA 250 777777777775 PP | |||||||
2 | Auxin_resp | 121 | 9.1e-40 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k RDX77688.1 275 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 358 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 931 aa Download sequence |
MTTSEPRLLG SFFAPMRLSS AAFSPPHQEG ERRVLDSELW HACAGPLVSL PAVGSRVVYF 60 PQGHSEQVAV STNKEVDAHI PNYPSLPPQL MCQLHNMTMH ADVETDEVYA QMTLQPLNPQ 120 EQKEAYLPAE LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ 180 ELIARDLHGN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW QCIFFNRNEK 240 NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI 300 PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWQ NSHWRSVKVG 360 WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGMK DDDFGMNSPL 420 LWLRDSDRGL QTLNLPGIGV NHWMQPRFDP SMLNMQTDMY QAVAAAAVQD MRSLDPSKQH 480 SASLLQFQQP QNFPNRTAAL MQAQMLQQSQ PQQIFGNNQE NQHSPQSQPQ TQAHLQQHLQ 540 RQHSFNSQHH HHHHQQQQLQ QPTQQQQQQQ VVENQQISSA VSTMSQFVSA AQPSSPPMQA 600 ISSLCQQQNF SDSNGNPVAT IVSPLHSILG SFPQDEASHL LNLPRTSSWI PVQNSSAWPS 660 KRVAVDPLLS SGASQCVLPQ VEQLGQPQST MSQNAITLPP FPGRECSIDQ EGSNDPQHHL 720 LFGVNIEPSS LLMPNAMSSL KGVSGNNDSS TLPYQSSNYL NTTTGNDSSL NHGMTQTIGE 780 SGFLQSPENA GQGNPLNKTF VKVYKSGSFG RSLDITKFSS YHELRGELAR MFGLEGELED 840 PMRSGWQLVF VDRENDVLLL GDGPWPEFVN SVWCIKILSP QEVQQMGNSG LELLNSVPIQ 900 RLSNGICDDY VSRQDPRNLC TGITTVGSLD Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |