PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX70216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 189aa MW: 21846 Da PI: 10.2859 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.1 | 3.5e-21 | 22 | 67 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+ELS+LC+aev +++fs+ +k y + RDX70216.1 22 KDPNTRQVTFSKRRTGLFKKANELSILCGAEVGIVVFSPGDKPYSF 67 66778**********************************9887766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MPTNHRCERI MGRRKIEIAE VKDPNTRQVT FSKRRTGLFK KANELSILCG AEVGIVVFSP 60 GDKPYSFGHP SVEVVADKFL QQNVTQRSGV QASDEVSDID RLNQQLSDVQ AQIRQEEKKG 120 AELHERFKQH QLAQLSRYKE LQGSYLEIQR KVKDYLDAIE VSESMMLLAQ EPVVRITKHV 180 TTKRRRRRN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 188 | RITKHVTTKRRRRR |
2 | 183 | 188 | KRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-35 | M-type_MADS family protein |