PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX68162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25161.7 Da PI: 8.3973 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.8 | 1.1e-35 | 38 | 139 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+++rkC +Cv+apyf+++q ++fa+vhk+FGa+nv+k+l+++ ++r++++ sl+yeA+ar+ dP+yG++++i + qqq+++l+ el +++ RDX68162.1 38 PCGACKYMKRKCCVQCVFAPYFASDQgLEQFAIVHKVFGANNVSKMLSNVALDQRHQMVVSLLYEARARLADPIYGCLSTIVSFQQQVASLQRELLMRQ 136 7*************************78*******************************************************************9998 PP DUF260 99 eel 101 ++l RDX68162.1 137 NQL 139 875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MADQPQEGGD EATSRVINKC IGKGTDKKCA KSRASTPPCG ACKYMKRKCC VQCVFAPYFA 60 SDQGLEQFAI VHKVFGANNV SKMLSNVALD QRHQMVVSLL YEARARLADP IYGCLSTIVS 120 FQQQVASLQR ELLMRQNQLI NSRTSYATLH QSTQQQANNN VAMQPAYSNN SPIPTNLMSF 180 INPGFDHLAM QTASSSHSLE PLQVSGLPQN EEESKIPQVL NNGMAHLIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-51 | LBD family protein |