PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX67289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 139aa MW: 16032.5 Da PI: 8.8242 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 56.1 | 1.1e-17 | 5 | 52 | 1 | 48 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk ++r+C+++C+++pyfp ++p++f +vh ++G+snv ++l+ RDX67289.1 5 KCAACKNHKRRCPSNCIFSPYFPGNDPQRFTCVHTIYGTSNVGNMLQF 52 5********************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence |
MMSGKCAACK NHKRRCPSNC IFSPYFPGND PQRFTCVHTI YGTSNVGNML QFHHIYVKKL 60 QILYILKHNV GFKTLFMDVL ELYQQIHETE IALTQIQTQI VCHRLQNPQV KPESNFVVLT 120 PQSSSASESQ LPSQFPWFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-21 | LBD family protein |