PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX65965.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 13795.9 Da PI: 8.8804 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.2 | 6.9e-44 | 7 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C++dC++apyfp+++ +kfa vhk+FG sn++k+lk+lp ++r da+sslvyeA+ar+r+PvyG+vg+i++lq q+++l+++lal+++ RDX65965.1 7 PCASCKLLRRRCSQDCIFAPYFPSSDLHKFATVHKVFGCSNISKMLKDLPVHQRADAVSSLVYEANARLRNPVYGCVGTISSLQTQVSELQNQLALAQA 105 7***********************************************************************************************998 PP DUF260 100 el 101 ++ RDX65965.1 106 KI 107 75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MGGNSLPCAS CKLLRRRCSQ DCIFAPYFPS SDLHKFATVH KVFGCSNISK MLKDLPVHQR 60 ADAVSSLVYE ANARLRNPVY GCVGTISSLQ TQVSELQNQL ALAQAKILNM QSMYREVCSY 120 NYPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-60 | LBD family protein |