PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX64188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25656.3 Da PI: 8.4277 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.3 | 7.5e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ RDX64188.1 2 SCNGCRVLRKGCSESCMLRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVET 100 6*********************9999777889****************************************************************998 PP DUF260 95 all 97 +l+ RDX64188.1 101 VLR 103 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSCNGCRVLR KGCSESCMLR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISNVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PEFMGLDAPA 120 AVADEASEAE VTCTDIWRIR DPNPNCRFTS SRSHKKLYTS AKRKRSEEFP KSQAPPNLDL 180 RLTPIFRPKV ESRRSGSPSM TSEESGTTTA CLESGFADQW GHGGDRKVLN LFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-82 | LBD family protein |