PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX63899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24239 Da PI: 5.1587 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.5 | 9.1e-38 | 7 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC++dCv+apyf +q + +fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar+++P yG+v++i +lqqq+++l++e+++l+ RDX63899.1 7 SCGACKFLRRKCTSDCVFAPYFSYDQaATHFAAVHKIYGASNVSKLLSHLPIQNRTDAAITISYEALARMQNPTYGCVAHIYALQQQVASLQEEIDALG 105 6***********************99789*****************************************************************98875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MTGFGSSCGA CKFLRRKCTS DCVFAPYFSY DQAATHFAAV HKIYGASNVS KLLSHLPIQN 60 RTDAAITISY EALARMQNPT YGCVAHIYAL QQQVASLQEE IDALGSLMAN PTVSIVNCGG 120 VQAPMNSNNE TQYNMLQNDA TRTQYCQNHL ANFLSQEGSA TVYQSFDSQM DIVLPNAHEL 180 EEPSFGDSNS NPFEQFLSGI DQEVFMNHPW FKHNADIKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 7e-57 | LBD family protein |