PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX63687.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 448aa MW: 47843 Da PI: 8.8066

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX63687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C +++rtG C yG+rC+++H++ RDX63687.1 50 GVANCVYYMRTGVCGYGSRCRYNHPR 75 7899********************96 PP
2	zf-CCCH	39.6	8.7e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++CkF+H++ RDX63687.1 96 EPPCQYYLKTGACKFGASCKFHHPK 120 79*********************96 PP
3	zf-CCCH	37.2	5e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ RDX63687.1 141 GEKECSYYLKTGQCKFGISCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	35.1	2.3e-11	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G C+++H++ RDX63687.1 297 PGEPECQYYLRTGDCKFGLACRYHHPR 323 5799*********************96 PP
5	zf-CCCH	33.4	7.7e-11	344	366	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++++G+Ck+G++CkF H+ RDX63687.1 344 QPCAFYLQNGHCKFGSTCKFDHP 366 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MDLYGRGPAR NGSNPVNQPE WRTPATDTGL EESMWHLTLG GGESYPERPG VANCVYYMRT 60 GVCGYGSRCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGACKF GASCKFHHPK 120 NGGGYLSQAP LNVYGNPLRP GEKECSYYLK TGQCKFGISC KFHHPQPAGT SLPASAPQFY 180 QQVQSPTVPL PEQYGGASTS LRVARPPILP GSYVQGAYGH VLLSPGVVPF PGWSHYSAPV 240 SPVPSPGAQP AVGATSLYGM TQLSSPTSAF ARPYTPLPST TGPSGSSLKE QLFPERPGEP 300 ECQYYLRTGD CKFGLACRYH HPRDHIVARP LLSPVGLPLR PGIQPCAFYL QNGHCKFGST 360 CKFDHPLGSM RYSPSASSLI DVPVTPYPVG SLLSQLAPST TSSELRPELM SGSKKESFSA 420 RIPSSGNSSG TSVGLIFSPG GSVSLSDS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MDLYGRGPAR NGSNPVNQPE WRTPATDTGL EESMWHLTLG GGESYPERPG VANCVYYMRT  60
GVCGYGSRCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGACKF GASCKFHHPK  120
NGGGYLSQAP LNVYGNPLRP GEKECSYYLK TGQCKFGISC KFHHPQPAGT SLPASAPQFY  180
QQVQSPTVPL PEQYGGASTS LRVARPPILP GSYVQGAYGH VLLSPGVVPF PGWSHYSAPV  240
SPVPSPGAQP AVGATSLYGM TQLSSPTSAF ARPYTPLPST TGPSGSSLKE QLFPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPRDHIVARP LLSPVGLPLR PGIQPCAFYL QNGHCKFGST  360
CKFDHPLGSM RYSPSASSLI DVPVTPYPVG SLLSQLAPST TSSELRPELM SGSKKESFSA  420
RIPSSGNSSG TSVGLIFSPG GSVSLSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein