PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX63633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LSD | ||||||||
Protein Properties | Length: 201aa MW: 22297.1 Da PI: 9.3404 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.7 | 9.1e-14 | 96 | 120 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++V+CalC+t+ RDX63633.1 96 CNGCRSLLLYPRGATNVCCALCNTI 120 ***********************97 PP | |||||||
2 | zf-LSD1 | 49.4 | 7.4e-16 | 135 | 159 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV RDX63633.1 135 CGGCRTLLMYTRGATSVRCSCCHTV 159 ************************9 PP | |||||||
3 | zf-LSD1 | 48.5 | 1.4e-15 | 173 | 196 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+CalC+ RDX63633.1 173 CGNCRTTLMYPYGAPSVKCALCHY 196 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MRRRRGNIGS RRNCKRERVG LRIESQSSTS SFHYTHIFRF LHSSLNLFFF PPLTPSFSPK 60 QKQQLLFLFL FSCFLLFDLV VAAGSGATAM QSQLVCNGCR SLLLYPRGAT NVCCALCNTI 120 TSVPPPGMEM SQLYCGGCRT LLMYTRGATS VRCSCCHTVN LVPASNQVAH VHCGNCRTTL 180 MYPYGAPSVK CALCHYITNV S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-57 | LSD family protein |