PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX61204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24737.9 Da PI: 8.5831 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.4 | 2.8e-44 | 17 | 115 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kf nvh++FGasnv+kll++l++++reda++sl+yeAe+r+rdPv+G+vg+i+ l+qql+ql+ +l+++k RDX61204.1 17 PCAACKFLRRKCQAECVFAPYFPPDQPQKFVNVHRIFGASNVSKLLNELHPHQREDAVNSLAYEAEMRLRDPVNGCVGIISLLHQQLRQLQMDLQTAKF 115 7*********************************************************************************************99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MNVKQGSKTM ASSSNPPCAA CKFLRRKCQA ECVFAPYFPP DQPQKFVNVH RIFGASNVSK 60 LLNELHPHQR EDAVNSLAYE AEMRLRDPVN GCVGIISLLH QQLRQLQMDL QTAKFELSKI 120 QSLGITTGYG HAVGAVTTAV AVNTSHGVNG GGHGNRCYNY NQLHQHHYHQ CVPQQLGRNF 180 DAGNNCEANV LAMNIASFGQ LSQLQQPSAA AVAARDDHTR RFDIT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 7e-61 | LBD family protein |