PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA20863.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family C3H
Protein Properties Length: 306aa    MW: 32370.9 Da    PI: 9.8842
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA20863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.8e-08106131227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+ C+ f     Ck+Gd+C+FaHg+
  OVA20863.1 106 KTRMCKKFNSAEGCKFGDKCHFAHGE 131
                 89**********************96 PP
2zf-CCCH36.29.9e-12273297126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC++f++ G C +G+rC+FaHg
  OVA20863.1 273 FKTKLCDNFSK-GSCTFGERCHFAHG 297
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDFGPARKRG RPDGALNGNG GFKRNKQEME SFTTGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIHA VAQMTNLGGN QALPPPSRNP VGPPPMPDVS SPSSVKTRMC KKFNSAEGCK  120
FGDKCHFAHG ERELGRQIGP SYEDPRAMGP PPMMGRMPNR YEQQLPPPGL AAAASFGASA  180
TAKISVDASL AGAIIGKGGV NSKQICRLTG AKLAIREHES DPNLRNIELE GTFDQIKQAS  240
AMVRELIVNV GSATGPIKNH PAAPAPAPSA NNFKTKLCDN FSKGSCTFGE RCHFAHGAND  300
LRKPGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-51C3H family protein