PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA20790.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

MYB

Protein Properties

Length: 354aa MW: 40604 Da PI: 5.4246

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA20790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l + ++ +G g+W+++++ g+ R++k+c++rw++yl OVA20790.1 14 KGLWSPEEDQKLFNHITTFGVGCWSSVPKQAGLQRCGKSCRLRWLNYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia ++ gRt++++k++w++ OVA20790.1 67 RGMFSKQEEDLIIRLHEVLGNR-WAQIATQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRPSCCLKP KLRKGLWSPE EDQKLFNHIT TFGVGCWSSV PKQAGLQRCG KSCRLRWLNY 60 LRPDLKRGMF SKQEEDLIIR LHEVLGNRWA QIATQLPGRT DNEIKNFWNS SLKKKLKQQG 120 IDPNTHKPLL SEIDEDKKNC TSAKENILQS SQQPFFNNSS YFNAEIHESS SKEHFLTKPV 180 FDIPFPLCEF QAGFDPIGNT NSSHLLECHQ NLRPALDQTH LEINQDFQFT SMPNLSSWHY 240 EDVKETDFSD NSTSRSSTLS FNNGIKDSSS TTNGHGEFGT NNMVENEVFS WNNDETKLES 300 LFGSFQVNGV KSEEVNVSYW EEDQPNRQNV ENHNSFLLTT LSEDLTDTSF DFLI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRPSCCLKP KLRKGLWSPE EDQKLFNHIT TFGVGCWSSV PKQAGLQRCG KSCRLRWLNY  60
LRPDLKRGMF SKQEEDLIIR LHEVLGNRWA QIATQLPGRT DNEIKNFWNS SLKKKLKQQG  120
IDPNTHKPLL SEIDEDKKNC TSAKENILQS SQQPFFNNSS YFNAEIHESS SKEHFLTKPV  180
FDIPFPLCEF QAGFDPIGNT NSSHLLECHQ NLRPALDQTH LEINQDFQFT SMPNLSSWHY  240
EDVKETDFSD NSTSRSSTLS FNNGIKDSSS TTNGHGEFGT NNMVENEVFS WNNDETKLES  300
LFGSFQVNGV KSEEVNVSYW EEDQPNRQNV ENHNSFLLTT LSEDLTDTSF DFLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	1e-74	MYB family protein