PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA20516.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family C3H
Protein Properties Length: 468aa    MW: 52688 Da    PI: 6.8406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA20516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.64.3e-13112137227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C+f++rtG C+yG++C+F+H+p
  OVA20516.1 112 DEADCSFYLRTGACRYGSNCRFNHPP 137
                 6799********************97 PP

2zf-CCCH32.81.2e-10189213327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+f+++tG Ck+G  C+++H++
  OVA20516.1 189 QPECKFYLKTGACKFGKACRYHHPR 213
                 799********************96 PP

3zf-CCCH31.33.5e-10234258226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+G Ck+  +C+F+H+
  OVA20516.1 234 GEKECPYYMRMGSCKFATNCRFHHP 258
                 7899********************9 PP

4zf-CCCH32.31.7e-10379405127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f+++G Cky + C+F+H++
  OVA20516.1 379 PGQRECQYFMKNGDCKYRSACRFHHPK 405
                 5789*********************96 PP

5zf-CCCH29.61.1e-09424448226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++ +G+CkyG+ Ck+ H+
  OVA20516.1 424 DQSICSHYSHYGICKYGPACKYDHP 448
                 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MGNSEQKDLV SKPQEKEEQI QSPPPSVPAC QNGPAIIEAL PGEFHDPAII EALPGEFHDP  60
AIIEALDVEF KKLELEVSNE NQKEVSEEEE EEEETISKEK KGNKIQYPFR PDEADCSFYL  120
RTGACRYGSN CRFNHPPRNK GPARSPNHFP ESVKEKDKEK DKEKDKEKDK GKEKEKEKEK  180
EEYPERAGQP ECKFYLKTGA CKFGKACRYH HPREKTVVGP AQQFNFLGLP IRPGEKECPY  240
YMRMGSCKFA TNCRFHHPDP TDTRGSDPLS EYHNGGSVPL HSTATPQSPV TSWSLPGTSN  300
GHLPYLDASP SYMRMMAPSQ GTQQNLEWNG YQVPVSPMYP SEESVHPPTI SVKNNSTKKA  360
DGSLHHQQQM ATDEFPERPG QRECQYFMKN GDCKYRSACR FHHPKNRLQN SPILSPMGLP  420
LRPDQSICSH YSHYGICKYG PACKYDHPLN IGSLAAPVLS ASGPASMH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-93C3H family protein