PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA20516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 468aa MW: 52688 Da PI: 6.8406 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.6 | 4.3e-13 | 112 | 137 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f++rtG C+yG++C+F+H+p OVA20516.1 112 DEADCSFYLRTGACRYGSNCRFNHPP 137 6799********************97 PP | |||||||
2 | zf-CCCH | 32.8 | 1.2e-10 | 189 | 213 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G C+++H++ OVA20516.1 189 QPECKFYLKTGACKFGKACRYHHPR 213 799********************96 PP | |||||||
3 | zf-CCCH | 31.3 | 3.5e-10 | 234 | 258 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Ck+ +C+F+H+ OVA20516.1 234 GEKECPYYMRMGSCKFATNCRFHHP 258 7899********************9 PP | |||||||
4 | zf-CCCH | 32.3 | 1.7e-10 | 379 | 405 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+++G Cky + C+F+H++ OVA20516.1 379 PGQRECQYFMKNGDCKYRSACRFHHPK 405 5789*********************96 PP | |||||||
5 | zf-CCCH | 29.6 | 1.1e-09 | 424 | 448 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++ +G+CkyG+ Ck+ H+ OVA20516.1 424 DQSICSHYSHYGICKYGPACKYDHP 448 6789********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence |
MGNSEQKDLV SKPQEKEEQI QSPPPSVPAC QNGPAIIEAL PGEFHDPAII EALPGEFHDP 60 AIIEALDVEF KKLELEVSNE NQKEVSEEEE EEEETISKEK KGNKIQYPFR PDEADCSFYL 120 RTGACRYGSN CRFNHPPRNK GPARSPNHFP ESVKEKDKEK DKEKDKEKDK GKEKEKEKEK 180 EEYPERAGQP ECKFYLKTGA CKFGKACRYH HPREKTVVGP AQQFNFLGLP IRPGEKECPY 240 YMRMGSCKFA TNCRFHHPDP TDTRGSDPLS EYHNGGSVPL HSTATPQSPV TSWSLPGTSN 300 GHLPYLDASP SYMRMMAPSQ GTQQNLEWNG YQVPVSPMYP SEESVHPPTI SVKNNSTKKA 360 DGSLHHQQQM ATDEFPERPG QRECQYFMKN GDCKYRSACR FHHPKNRLQN SPILSPMGLP 420 LRPDQSICSH YSHYGICKYG PACKYDHPLN IGSLAAPVLS ASGPASMH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-93 | C3H family protein |